Author

Chia-Yi Cheng

National Taiwan University - Cited by 1,494 - Systems biology - machine learning - gene-to-trait relation

Biography

Scientific research professional with multidisciplinary competencies in bioinformatics, genetics, plant development, molecular biology, and personnel training. Proficient in the analysis of high-throughput sequencing data, experimental design, and troubleshooting. Expertise in conducting and performing assays, preparing and optimizing protocols, organizing and managing documentation, identifying and troubleshooting experimental issues and determining appropriate solutions.
Title
Cited by
Year
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
CY Cheng, V Krishnakumar, AP Chan, F Thibaud‐Nissen, S Schobel, ...The Plant Journal 89 (4), 789-804, 2017201
791
2017
Araport: the Arabidopsis information portal
V Krishnakumar, MR Hanlon, S Contrino, ES Ferlanti, S Karamycheva, ...Nucleic acids research 43 (D1), D1003-D1009, 2015201
216
2015
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis
T Raines, C Shanks, CY Cheng, D McPherson, CT Argueso, HJ Kim, ...The Plant Journal 85 (1), 134-147, 2016201
104
2016
Cytokinin‐dependent specification of the functional megaspore in the Arabidopsis female gametophyte
CY Cheng, DE Mathews, G Eric Schaller, JJ KieberThe Plant Journal 73 (6), 929-940, 2013201
86
2013
ThaleMine: a warehouse for Arabidopsis data integration and discovery
V Krishnakumar, S Contrino, CY Cheng, I Belyaeva, ES Ferlanti, JR Miller, ...Plant and Cell Physiology 58 (1), e4-e4, 2017201
43
2017
Role of BASIC PENTACYSTEINE transcription factors in a subset of cytokinin signaling responses
CM Shanks, A Hecker, CY Cheng, L Brand, S Collani, M Schmid, ...The Plant Journal 95 (3), 458-473, 2018201
37
2018
Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships
CY Cheng, Y Li, K Varala, J Bubert, J Huang, GJ Kim, J Halim, J Arp, ...Nature communications 12 (1), 5627, 2021202
34
2021
EXO70D isoforms mediate selective autophagic degradation of type-A ARR proteins to regulate cytokinin sensitivity
AK Acheampong, C Shanks, CY Cheng, GE Schaller, Y Dagdas, ...Proceedings of the National Academy of Sciences 117 (43), 27034-27043, 2020202
29
2020
The role of cytokinin in ovule development in Arabidopsis
CY Cheng, JJ KieberPlant signaling & behavior 8 (3), 929-40, 2013201
19
2013
Cytokinin signaling in plants
CY Cheng, JJ KieberMolecular Biology. The Plant Sciences 2, 269-289, 201415201
15
2014