Author

Xu Jinrui

Yale University - Cited by 3,728 - Genomics - Genetics - Population Genetics - Molecular Evolution - Structural Bioinformatics

Biography

Xu Jinrui belongs to the  field of molecular evolution has progressed with the accumulation of various molecular data. It started with the analysis of protein sequence data, followed by that of gene and genome sequence dada. Recently, structural genomics and proteomics have offered new types of data for addressing molecular evolution questions. Structural genomics refers to genome-wide collection of protein structures, whereas proteomics is the study of all proteins in a cell or organism.
Title
Cited by
Year
GENCODE reference annotation for the human and mouse genomes
A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ...Nucleic acids research 47 (D1), D766-D773, 2019201
2174
2019
How significant is a protein structure similarity with TM-score= 0.5?
J Xu, Y ZhangBioinformatics 26 (7), 889-895, 2010201
748
2010
GENCODE 2021
A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ...Nucleic acids research 49 (D1), D916-D923, 2021202
423
2021
The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors
MM Kudron, A Victorsen, L Gevirtzman, LDW Hillier, WW Fisher, ...Genetics 208 (3), 937-949, 2018201
146
2018
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...Nature communications 11 (1), 3696, 2020202
83
2020
Are human translated pseudogenes functional?
J Xu, J ZhangMolecular Biology and Evolution 33 (3), 755-760, 2015201
58
2015
Why human disease-associated residues appear as the wild-type in other species: genome-scale structural evidence for the compensation hypothesis
J Xu, J ZhangMolecular biology and evolution 31 (7), 1787-1792, 2014201
29
2014
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA AkiyamaNature 583 (7818), 693-699, 2020202
17
2020
CytoSVM: an advanced server for identification of cytokine-receptor interactions
JR Xu, JX Zhang, BC Han, L Liang, ZL JiNucleic acids research 35 (suppl_2), W538-W542, 2007200
10
2007
To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq
J Xu, MM Kudron, A Victorsen, J Gao, HN Ammouri, FCP Navarro, ...Nucleic acids research 4 (3), e17-e17, 2021202
9
2021
Variants that differentiate wolf and dog populations are enriched in regulatory elements
P Sahlén, L Yanhu, J Xu, E Kubinyi, GD Wang, P SavolainenGenome Biology and Evolution 13 (4), evab06, 2021202
7
2021
Impact of structure space continuity on protein fold classification
J Xu, J ZhangScientific reports 6 (1), 23263, 2016201
7
2016
To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq
J Xu, MM Kudron, A Victorsen, J Gao, HN Ammouri, FCP Navarro, ...bioRxiv, 2019.12. 17.88001, 2019201
3
2019
GRAM: A generalized model to predict the molecular effect of a non-coding variant in a cell-type specific manner
S Lou, KA Cotter, T Li, J Liang, H Mohsen, J Liu, J Zhang, S Cohen, J Xu, ...PLoS genetics 15 (8), e1007860, 2019201
3
2019
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ...Cell 186 (7), 1493-1511. e40, 030
2
2023
Building integrative functional maps of gene regulation
J Xu, HE Pratt, JE Moore, MB Gerstein, Z WengHuman Molecular Genetics 31 (R1), R114-R1, 0
2
2022
Discovering a less-is-more effect to select transcription factor binding sites informative for motif inference
J Xu, J Gao, M GersteinbioRxiv, 2020.. 29.40294, 2020202
1
2020

Referred From: https://scholar.google.com/citations?user=j6xKH9AAAAAJ&hl=en

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Citations 3728
h-index 9
i10-index 9
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